MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3200_ses-1_T1w.
  • Date and time: 2024-06-14, 18:28.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.38839086250219823
cnr3.4106431473609544
efc0.5927166518279345
fber5534.342610855431
fwhmavg3.369123333333334
fwhmx3.3229
fwhmy3.60853
fwhmz3.17594
icvscsf0.20136663356234424
icvsgm0.39413352301343635
icvswm0.4044998434242194
inumed1.1783502101898193
inurange0.3348000943660734
qi10.0
qi20.005871983922197801
rpvecsf28.010166828977052
rpvegm14.599390867634998
rpvewm17.98858590472244
sizex176
sizey256
sizez256
snrcsf2.296111371882593
snrgm9.245622932552221
snrtotal9.404445041704912
snrwm16.671600820679927
snrdcsf41.859894867867155
snrdgm96.87996510155585
snrdtotal94.04549484411602
snrdwm143.39662456292507
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2652.5585676980872
summarybgmad4.568340511595578
summarybgmean8.302075315137616
summarybgmedian6.162597700953484
summarybgn2379446.0
summarybgp050.0
summarybgp9519.04084674268961
summarybgstdv10.45343408616334
summarycsfk9.278246112449647
summarycsfmad141.91139819994982
summarycsfmean302.64503496269845
summarycsfmedian291.89381033554673
summarycsfn5674.0
summarycsfp05124.53977892324329
summarycsfp95501.7658155012871
summarycsfstdv127.11408110572808
summarygmk0.17756749955436257
summarygmmad70.57500405734194
summarygmmean673.7767945330531
summarygmmedian675.5550210513175
summarygmn8270.0
summarygmp05548.5857564959675
summarygmp95790.6731361817567
summarygmstdv73.06313279602772
summarywmk0.616708671194917
summarywmmad55.405770820120736
summarywmmean998.8771616961435
summarywmmedian999.9209808111191
summarywmn210695.0
summarywmp05897.4480421170592
summarywmp951095.2042221873999
summarywmstdv59.97736022187752
tpmoverlapcsf0.16369189321994781
tpmoverlapgm0.4288768768310547
tpmoverlapwm0.5166982412338257
wm2max0.4280158273867902
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime13:37:54.250000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageOrientationPatientDICOM[0.0257671, 0.994436, -0.102145, 0.0868519, -0.10402, -0.990776]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.263
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber5
ShimSetting[2630, 5314, -7407, -78, 97, -697, 80, -290]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp267.692
md5sum4073eebdf5a3e2fc2f223e0b7f9f4659
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.